55. *
Heterogeneity of polymer network micro-regions as formed by
end-linking processes
*

S. Norris, A. Kasko, T. Chou, M. R. D’Orsogna,
submitted (2019)

54. *
How heterogeneous thymic output and T cell proliferation shape immunoclone
abundance distributions
*

R. Dessalles, M. R. D’Orsogna, T. Chou,
submitted (2019)

53. *
Local alliances and rivalries shape near-repeat terror activity of
al-Qaeda, ISIS and insurgents
*

Y. L. Chuang, N. Ben Asher, M. R. D’Orsogna,
Proceedings of the National Academy of Sciences,
116 20898-20903 (2019)

52. *
Mathematical models of radicalization and terrorism
*

Y.L. Chuang, M. R. D’Orsogna in
Understanding Crime Through Science, edited by N. Derszy, Springer (2019)

51. *
A network model of immigration: Enclave formation vs. cultural
integration
*

Y.L. Chuang, T. Chou, M. R. D’Orsogna
Networks and Heterogeneous Media, 14 53-77 (2019)

50. *
Exact steady-state distributions of multispecies
birth-death-immigration processes:
Effects of mutations and carrying
capacity on diversity
*

R. Dessalles, M. R. D’Orsogna, T. Chou,
Journal of Statistical Physics,
173 182-221
(2018)

49. *
The effects of statistical multiplicity of infection on virus
quantification and infectivity assays
*

B. Mistry, M. R. D’Orsogna, T. Chou, Biophysical Journal, 114
2974-2985 (2018)

48. *
Age-structured social interactions enhance radicalization
*

Y. L. Chuang, T. Chou, M. R. D’Orsogna,
Journal of Mathematical Sociology,
42 128-151 (2018)

47. *
Perturbing the hypothalamic-pituitary-adrenal axis: A mathematical
model for interpreting PTSD assessment tests
*

L.U. Kim, M. R. D’Orsogna, T. Chou,
Computational Psychiatry, 13
1-22 (2017)

46. *
Phthalates, Heavy Metals and PAHs in an overpopulated coastal region:
Inferences from Abruzzo, central Italy
*

F. Stoppa, M. Schiazza., J. Pellegrini, F. A.
Ambrosio, G. Rosatelli, M. R. D’Orsogna,
Marine Pollution Bulletin,
125 501-512 (2017)

45. *
Modeling radicalization: How small violent fringe sects develop into
large indoctrinated societies
*

M. B. Short, S. G. McCalla,
M. R. D’Orsogna, Royal Society Open Science,
4 170678
(2017)

44. *
Kinetic models for the sensitivity of HIV
entry to receptor and coreceptor concentrations
*

B. Mistry, M.R. D’Orsogna, N. Webb, B.H. Lee, T. Chou,
Journal of Physical Chemistry B, 120 6189-6199 (2016)

43. *
A bistable belief dynamics model
for radicalization within sectarian conflict
*

Y.L. Chuang, M.R. D’Orsogna, T. Chou,
Quarterly of Applied Mathematics 75 19-37 (2016)

42. *
Swarming in viscous fluids: Three-dimensional patterns in swimmer-
and force-induced flows
*

Y.L. Chuang, T. Chou and
M.R. D’Orsogna,
Physical Review E 93
043112 (2016)

41. *
Onset, timing and exposure therapy of
stress disorders: mechanistic insight from a mathematical
*

*
model of oscillating neuroendocrine dynamics
*

L.U. Kim,
M.R. D’Orsogna and T. Chou,
Biology Direct 11:13, 1-18
(2016)

40. *
Growth and containment of a hierarchical criminal network
*

C. Marshak, M.P. Rombach, A. Bertozzi and
M.R. D’Orsogna, Physical Review E 93, 022308 (2016)

39. *
Crime, punishment and evolution in an adversarial game
*

M. McBride, R. Kendall,
M. R. D’Orsogna and M. B. Short, European Journal of Applied Mathematics
10:1017, 1-21 (2015)

38. *
First assembly times and equilibration in stochastic coagulation-fragmentation
*

M. R. D’Orsogna, Q. Lei and T. Chou,
Journal of Chemical Physics 139, 014112 (2015)

37. *
Physics for better human societies
*

M. R. D’Orsogna and M. Perc,
Phys. Life Rev. 12 40-43 (2015)

36. *
Statistical physics of crime: A review
*

M. R. D’Orsogna and M. Perc,
Phys. Life Rev. 12 1-21 (2015)

35. *
Hydrocarbon contamination in sediments of the Pertusillo freshwater
reservoir, Val d'Agri, Southern Italy
*

A. Colella and M. R. D’Orsogna,
Fresenius Env. Bull. 23 12a (2014)

34. *First passage
problems in biology*

T. Chou and
M. R. D’Orsogna,
in "First-passage phenomena and their application", 306-345

edited by R. Metzler, G. Oshanin, S. Redner,
World Scientific, Singapore (2014)

33. *
Recidivism and rehabilitation of
criminal offenders: a carrot and stick evolutionary game
*

B. Berenji, T. Chou and
M. R. D’Orsogna,
PLoS One 9 e85531 (2014)

32. *
Combinatoric and mean-field analysis of heterogeneous self-assembly
*

B. Zhao, B. Berenji, T. Chou and M. R. D’Orsogna,
Journal of Chemical Physics 139 121918 (2013)

31. *
Criminal defectors lead to the emergence of
cooperation in an experimental, adversarial game
*

M. R. D’Orsogna, R. Kendall, M. McBride and M. B. Short,
PLoS One 8 e61458 (2013)

30. *
External conversions of player strategy in an evolutionary game:
a cost-benefit analysis through optimal control
*

M. B. Short, A. B. Pitcher and
M. R. D’Orsogna, European Journal of Applied Mathematics 24 131-159 (2013)

29. *
Territorial developments based on graffiti: a statistical
mechanics approach *

A. B. T. Barbaro, L. Chayes
and M. R. D’Orsogna, Physica A
392 252-270 (2013)

28. *
First passage times in homogeneous nucleation and self-assembly
*

R. Yvinec,
M. R. D’Orsogna and T. Chou,
Journal of Chemical Physics 137 244107 (2012)

27. *
Locust dynamics: behavioral phase change and swarming
*

C. M. Topaz, M. R. D’Orsogna, L. Edelstein-Keshet
and A. J. Bernoff, PLoS Computational Biology 8 e1002642 (2012)

26. *
Stochastic self-assembly of incommensurate clusters
*

M. R. D’Orsogna, G. Lakatos and T. Chou,
Journal of Chemical Physics 136 084110 (2012)

25. * Coarsening and
accelerated equilibration in mass-conserving heterogeneous nucleation
*

T. Chou, M. R. D’Orsogna,
Physical Review E 84 011608 (2011)

24. * Cooperation and
punishment in an adversarial game: How defectors pave the way to
peaceful society *

M. B. Short, J. Brantingham,
M. R. D’Orsogna, Physical Review E 82 066603 (2010)

23. *
Diffusion-dependent mechanisms of receptor engagement and viral entry
*

M. Gibbons, T. Chou, M. R. D’Orsogna,
Journal of Physical Chemistry B 114 15403-15412 (2010)

22. *
Arrival times in a zero-range process with injection and decay
*

B. Hertz-Shargel, M. R. D’Orsogna, T. Chou,
Journal of Physics A 43 305003 (2010)

21. * Enhancement of
cargo processivity by cooperating molecular motors
*

F. Posta, M. R. D'Orsogna, T. Chou,
Phys. Chem. Chem. Phys. 11 4851 (2009)

20. * Optimal
transport and apparent drug resistance in viral infections
*

M. R. D'Orsogna, T. Chou, PLoS One 4 e8165 (2009)

19. * Double milling in
self-propelled swarms from kinetic theory
*

J. Carrillo, M. R. D'Orsogna, V. Panferov,
Kinetic and Related Models 2 363-378 (2009)

18. *Measuring and
modeling repeat and near-repeat burglary effects
*

M. Short, M. R. D'Orsogna, G. Tita,
J. Brantingham, Journal of Quantitative Criminology 25 325-339 (2009)

17. *A Statistical Model of Criminal
Behavior *

M. Short, M. R. D'Orsogna, V. Pasour,
G. Tita, J. Brantingham, A. Bertozzi, L. Chayes, Math. Mod. Meth. 18 1249-1267 (2008)

16. * Multistage
adsorption of diffusing macromolecules and viruses*

T. Chou, M. R. D'Orsogna, Journal of Chemical Physics 127 105101 (2007)

15. *State transitions
and the continuum limit for interacting, self-propelled
particles*

Y. Chuang, M. R. D'Orsogna, D. Marthaler,
A. Bertozzi, L. Chayes, Physica D 232 33 (2007)

14. *Exact steady
state velocity of ratchets driven by random sequential
adsorption*

M. R. D’Orsogna, T. Antal, T. Chou,
Journal of Physics A 40 5575 (2007)

13. *Multi-Vehicle
flocking: Scalability of Cooperative Control Algorithms using
pairwise Potentials *

Y. L. Chuang, Y. Huang, M. R. D’Orsogna, A. Bertozzi,
Proceedings from the 2007 IEEE International
conference on robotics and automation, Rome, Italy 2292 (2007)

12. *Self-propelled
particles with soft-core interactions: patterns, stability and
collapse*

M. R. D’Orsogna, Y. L. Chuang, A. Bertozzi, L. Chayes,
Physical Review Letters 96 104302 (2006)

11. *Pattern formation, stability and collapse in 2D driven particle systems*

M. R. D’Orsogna, Y. Chuang, A. Bertozzi, L. Chayes in ‘Device applications of non linear
dynamics’, page 103, edited by A. Bulsara and S. Baglio (Springer-Verlag , Berlin Heidelberg,
2006)

10. *First Passage and Cooperativity of Queuing Kinetics*

M. R. D’Orsogna, T. Chou, Physical Review Letters 95 170603 (2005)

9. *Interparticle gap distributions on one-dimensional lattices*

M. R. D’Orsogna, T. Chou, Journal of Physics A 38 531 (2005)

8. *Chiral molecule adsorption on helical polymers*

M. R. D’Orsogna, T. Chou, Physical Review E 69 021805 (2004)

7. *Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics*

M. R. D’Orsogna, M. iew. Suchard, T. Chou, Physical Review E 68 021925 (2003)

6. *Charge transfer, symmetry, and dissipation in donor-acceptor molecules*

M. R. D’Orsogna, R. Bruinsma, Physical Review Letters 90 078301 (2003)

5. *Two-level system with a thermally fluctuating transfer matrix element:
Application to the problem of DNA charge transfer*

M. R. D’Orsogna, J. Rudnick, Physical Review E 66 041804 (2002)

4. *Fluctuation-facilitated charge migration along DNA*

R. Bruinsma, G. Gruner, M. R. D’Orsogna, J. Rudnick, Physical Review Letters 85 4393 (2000)

3. *Edge diffusion during growth: The kink Ehrlich-Schwoebel effect and resulting instabilities*

O. Pierre-Louis, M. R. D’Orsogna, T. Einstein, Physical Review Letters 82 3661 (1999)

2. *Wetting of rough walls*

A. Stella, G. Sartoni, G. Giugliarelli, M. R. D’Orsogna,
International Journal of Thermophysics 19 1209 (1998)

1. *Effect of surface roughness on bulk-disorder-induced wetting*

G. Sartoni, A. Stella, G. Giugliarelli, M. R. D’Orsogna,
Europhysics Letters 39 633 (1997)